pxrmk - remove two-degree internal nodes from a tree

Author

       Written by Joseph W. Brown, Stephen A. Smith (blackrim)

Citation

       Brown, Joseph W., Joseph F. Walker, and Stephen A.  Smith.  2017.  Phyx:  phylogenetic  tools  for  unix.
       Bioinformatics 33(12): 1886-1888. https://doi.org/10.1093/bioinformatics/btx063.

Copyright

       Copyright © 2016-2024 FePhyFoFum License GPLv3

pxrmk 1.3.1                                         June 2024                                           PXRMK(1)

Description

       Remove  two-degree  internal nodes ('knuckles') from a tree.  This will take a newick- or nexus-formatted
       tree from a file or STDIN.  Output is written in newick format.

Name

       pxrmk - remove two-degree internal nodes from a tree

Options

-t, --treef=FILE
              input tree file, STDIN otherwise

       -o, --outf=FILE
              output tree file, STOUT otherwise

       -h, --help
              display this help and exit

       -V, --version
              display version and exit

       -C, --citation
              display phyx citation and exit

Reporting Bugs

       Report      bugs      to:      <https://github.com/FePhyFoFum/phyx/issues>      phyx      home      page:
       <https://github.com/FePhyFoFum/phyx>