reorient - Reorientation

       CMTK  is  developed  with support from the NIAAA under Grant AA021697, National Consortium on Alcohol and
       Neurodevelopment in Adolescence (N-CANDA): Data Integration Component. From April 2009 through  September
       2011, CMTK development and maintenance was supported by the NIBIB under Grant EB008381.

CMTK 3.3.1p2                                       Feb 26 2025                                       reorient(1)

       Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis, Calvin R.  Maurer,  Daniel  B.
       Russakoff, and Yaroslav Halchenko

       Report bugs at http://nitrc.org/projects/cmtk/

       Convert  between  image  orientations,  i.e., physically re-order pixel array and adapt stored anatomical
       orientation information

http://www.fsf.org/licensing/licenses/gpl.html

       reorient - Reorientation

GlobalToolkitOptions(thesearesharedbyallCMTKtools)--help
            Write list of basic command line options to standard output.

       --help-all
            Write complete list of basic and advanced command line options to standard output.

       --wiki
            Write list of command line options to standard output in MediaWiki markup.

       --man
            Write man page source in 'nroff' markup to standard output.

       --version
            Write toolkit version to standard output.

       --echo
            Write the current command line to standard output.

       --verbose-level<integer>
            Set verbosity level.

       --verbose, -v
            Increment verbosity level by 1 (deprecated; supported for backward compatibility).

       --threads<integer>
            Set maximum number of parallel threads (for POSIX threads and OpenMP).

   MainOptions--input-orientation<string>, -i<string>
            Override input orientation. This is a three-letter code, e.g., 'RAS', 'LPI', etc.  [Default:NONE]--output-orientation<string>, -o<string>
            Override output orientation. Default is 'RAS', or the closest match supported by  the  output  image
            file format [Default:NONE]--output-space<string>
            Override  output coordinate space (e.g., 'RAS', 'LAS', 'LPS'). This does not affect the array order.
            Default is to write image in the input image space.  [Default:NONE]

       reorient [options] new-orientation infile outfile