statistics - Image statistics

       CMTK  is  developed  with support from the NIAAA under Grant AA021697, National Consortium on Alcohol and
       Neurodevelopment in Adolescence (N-CANDA): Data Integration Component. From April 2009 through  September
       2011, CMTK development and maintenance was supported by the NIBIB under Grant EB008381.

CMTK 3.3.1p2                                       Feb 26 2025                                     statistics(1)

       Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis, Calvin R.  Maurer,  Daniel  B.
       Russakoff, and Yaroslav Halchenko

       Report bugs at http://nitrc.org/projects/cmtk/

       Statistical computations on image pixel intensities, i.e., means and standard deviations

http://www.fsf.org/licensing/licenses/gpl.html

       statistics - Image statistics

GlobalToolkitOptions(thesearesharedbyallCMTKtools)--help
            Write list of basic command line options to standard output.

       --help-all
            Write complete list of basic and advanced command line options to standard output.

       --wiki
            Write list of command line options to standard output in MediaWiki markup.

       --man
            Write man page source in 'nroff' markup to standard output.

       --version
            Write toolkit version to standard output.

       --echo
            Write the current command line to standard output.

       --verbose-level<integer>
            Set verbosity level.

       --verbose, -v
            Increment verbosity level by 1 (deprecated; supported for backward compatibility).

       --threads<integer>
            Set maximum number of parallel threads (for POSIX threads and OpenMP).

   MainOptions--label, -l
            Interpret voxel values as labels

       --gray, -g
            Interpret voxel values as gray values (default) [Thisisthedefault]--log, -L
            Apply log() function to data

       --exp, -e
            Apply exp() function to data

       --num-bins<integer>, -n<integer>
            Number of histogram bins.  [Default:256]--column, -C
            Write statistics in column format rather than line format.

       --e-notation, -E
            Write floating point numbers in #e# notation (i.e., 1e-3 instead of 0.001)

       --mask<string>, -m<string>
            Analyze region based on binary mask file [Default:disabled]--Mask<string>, -M<string>
            Analyze regions separately based on mask file (label field).  [Default:NONE]--mask-output-all-up-to<integer>
            Output  results  for all mask values up to given value, even such that do not actually appear in the
            mask.  [Default:0]--percentile<double>, -p<double>
            Add value to list of percentile to compute.

       statistics [options] ImageFile0 [ImageFile1 ...]