slurm_srst2 - running srst2 against multiple read sets

       This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage
       of the program.

slurm_srst2 0.1.6                                 December 2015                                   SLURM_SRST2(1)

       Submit SRST2 jobs through SLURM (see srst(1))

       slurm_srst2 - running srst2 against multiple read sets

-h, --help
              show this help message and exit

       --walltime WALLTIME
              wall time (default 0-1:0 = 1 h)

       --memory MEMORY
              mem (default 4096 = 4gb)

       --rundir RUNDIR
              directory to run in (default current dir)

       --script SCRIPT
              path to srst2 (default srst2)

       --output OUTPUT
              identifier for outputs (will be combined with read set identifiers)

       --input_se INPUT_SE [INPUT_SE ...]
              Single end read file(s) for analysing (may be gzipped)

       --input_pe INPUT_PE [INPUT_PE ...]
              Paired end read files for analysing (may be gzipped)

       --forward FORWARD
              Designator  for  forward  reads  (only used if NOT in MiSeq format sample_S1_L001_R1_001.fastq.gz;
              otherwise default is _1, i.e. expect forward reads as sample_1.fastq.gz)

       --reverse REVERSE
              Designator for reverse reads (only used if NOT  in  MiSeq  format  sample_S1_L001_R2_001.fastq.gz;
              otherwise default is _2, i.e. expect forward reads as sample_2.fastq.gz)

       --other_args OTHER_ARGS
              string containing all other arguments to pass to srst2