asn2gb - convert ASN.1 biological data to a GenBank-style flat format

       The National Center for Biotechnology Information.

asn2gb converts descriptions of biological sequences from NCBI's ASN.1 format to one of several flat-file
       formats, and is the successor to asn2ff(1).

       asn2gb - convert ASN.1 biological data to a GenBank-style flat format

       A summary of options is included below.

       -      Print usage message

       -Aaccession
              Accession  to fetch; may take the form accession,complexity,flags where complexity should normally
              be 0 and a flags value of -1 enables fetching of external features (as with the legacy -F option)

       -F     Fetch remote annotations (equivalent to specifying -Aaccession,0,-1)

       -aasn-type
              ASN.1 Type:
              [Single record]
              a      Any (autodetected; default)
              e      seq-Entry
              b      Bioseq
              s      bioseq-Set
              m      seq-subMit
              q      Catenated
              [Release file; components individually processed and freed]
              t      baTch bioseq-set
              u      batch seq-sUbmit

       -b     Input file is binary

       -c     Batch file is compressed

       -d     Seq-loc minus strand

       -fformat
              Format:
              b      GenBank (default)
              bp or pb
                     GenBank and GenPept
              e      EMBL
              p      GenPept
              q      nucleotide GBSet (XML)
              r      protein GBSet (XML)
              t      Feature table only
              x      nucleotide INSDSet (XML)
              y      tiny seq (XML)
              Y      FASTA
              z      protein INSDSet (XML)

       -gN   Bit flags (all default to off):
              1      HTML
              2      XML
              4      ContigFeats
              8      ContigSrcs
              16     FarTransl

       -hN   Lock/Lookup Flags (all default to off):
              8      LockProd
              16     LookupComp
              64     LookupProd

       -ifilename
              Input file name (default = stdin)

       -jN   Start location (default is 0, beginning of sequence)

       -kN   End location (default is 0, end of sequence)

       -lfilename
              Log file

       -mmode
              Mode:
              r      Release
              e      Entrez
              s      Sequin (default)
              d      Dump

       -nfilename
              Asn2Flat Executable (default = asn2flat)

       -ofilename
              Output file name (default = stdout)

       -p     Propagate top descriptors

       -qfilename
              Ffdiff Executable (default = /netopt/genbank/subtool/bin/ffdiff)

       -r     Enable remote fetching

       -sstyle
              Style:
              n      Normal (default)
              s      Segment
              m      Master
              c      Contig

       -tN   Batch:
              1      Report
              2      Sequin/Release
              3      asn2gb SSEC/nocleanup
              4      asn2flat BSEC/nocleanup
              5      asn2gb/asn2flat
              6      asn2gb NEW dbxref/OLD dbxref
              7      oldasn2gb/newasn2gb
       -uN Custom flags (all default to off):
              4      Hide features
              1792   Hide references
              8192   Hide sources
              262144 Hide translations

       -yN   Feature itemID

asn2all(1),    asn2asn(1),    asn2ff(1),    asn2fsa(1),    asn2xml(1),    asndhuff(1),     insdseqget(1),
       /usr/share/doc/libncbi6-dev/asn2gb.txt.gz.

NCBI                                               2016-09-01                                          ASN2GB(1)

asn2gb  [-]  [-Aaccession]  [-F]  [-aasn-type]  [-b]  [-c] [-d] [-fformat] [-gN] [-hN] [-ifilename]
       [-jN] [-kN] [-lfilename] [-mmode] [-nfilename]  [-ofilename]  [-p]  [-qfilename]  [-r]  [-sstyle]
       [-tN] [-uN] [-yN]