atac - comparative mapping between genome sequences

       atac computes a one-to-one pairwise alignment of large DNA sequences.  It first finds the  unique  k-mers
       in  each  sequence,  chains  them  to  larger blocks, and fills in spaces between blocks.  It was written
       primarily to transfer annotations between different assemblies of the human genome.

       The output is a set of ungapped 'matches', and a set of gapped 'runs'  formed  from  the  matches.   Each
       match or run associates one sequence with the other sequence.  The association is 'unique', in that there
       is  no  other  (sizeable) associations for either sequence.  Thus, large repeats and duplications are not
       present in the output - they appear as unmapped regions.

       Though the output is always pairwise, atac can cache intermediate  results  to  speed  a  comparisons  of
       multiple sequences.

       atac - comparative mapping between genome sequences

       Run with no options for a list of parameters.

leaff(1),
       /usr/share/doc/atac/README.atac
       http://kmer.sourceforge.net/wiki/index.php/Getting_Started_with_ATAC

                                                  November 2016                                          ATAC(1)

atac-meryldiralignment_cache_dir-dirresult_dir-id1seqid1-seq1seqfile1.fasta-id2seqid2-seq2seqfile2.fasta