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bp_aacomp - amino acid composition of protein sequences

Author - Jason Stajich

Description

       This scripts prints out the count of amino acids over all protein sequences from the input file.

Feedback

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       User  feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments
       and suggestions preferably to the Bioperl mailing list.  Your participation is much appreciated.

         bioperl-l@bioperl.org                  - General discussion
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   ReportingBugs
       Report bugs to the Bioperl bug tracking system to help us keep track of the bugs  and  their  resolution.
       Bug reports can be submitted via the web:

         https://github.com/bioperl/bioperl-live/issues

History

       Based on aacomp.c from an old version of EMBOSS

perl v5.32.1                                       2021-08-15                                      BP_AACOMP(1p)

Name

       bp_aacomp - amino acid composition of protein sequences

Options

       The default sequence format is fasta.

       The sequence input can be provided using any of the three methods:

       unnamed argument
            bp_aacomp filename

       named argument
            bp_aacomp -i filename

       standard input
            bp_aacomp < filename

Synopsis

         bp_aacomp [-f/--format FORMAT] [-h/--help] filename
         or
         bp_aacomp [-f/--format FORMAT] < filename
         or
         bp_aacomp [-f/--format FORMAT] -i filename

See Also