fuzzpro - Search for patterns in protein sequences

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       Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to
       the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

       This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be
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EMBOSS 6.4.0                                       05/11/2012                                        FUZZPRO(1e)

fuzzpro is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It
       is part of the "Protein:Motifs" command group(s).

       fuzzpro - Search for patterns in protein sequences

Inputsection-sequenceseqall-patternpattern
           The standard IUPAC one-letter codes for the amino acids are used. The symbol 'x' is used for a
           position where any amino acid is accepted. Ambiguities are indicated by listing the acceptable amino
           acids for a given position, between square parentheses '[ ]'. For example: [ALT] stands for Ala or
           Leu or Thr. Ambiguities are also indicated by listing between a pair of curly brackets '{ }' the
           amino acids that are not accepted at a given position. For example: {AM} stands for any amino acid
           except Ala and Met. Each element in a pattern is separated from its neighbor by a '-'. (Optional in
           fuzzpro). Repetition of an element of the pattern can be indicated by following that element with a
           numerical value or a numerical range between parenthesis. Examples: x(3) corresponds to x-x-x, x(2,4)
           corresponds to x-x or x-x-x or x-x-x-x. When a pattern is restricted to either the N- or C-terminal
           of a sequence, that pattern either starts with a '<' symbol or respectively ends with a '>' symbol. A
           period ends the pattern. (Optional in fuzzpro). For example, [DE](2)HS{P}X(2)PX(2,4)C

   Outputsection-outfilereport

       fuzzpro is fully documented via the tfm(1) system.

fuzzpro-sequenceseqall-patternpattern-outfilereportfuzzpro-help