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infoseq - Display basic information about sequences

Author

DebianMedPackagingTeam <debian-med-packaging@lists.alioth.debian.org>
           Wrote the script used to autogenerate this manual page.

Bugs

       Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to
       the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

Description

infoseq is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It
       is part of the "Data retrieval:Sequence data" command group(s).

Name

       infoseq - Display basic information about sequences

Options

Inputsection-sequenceseqallAdvancedsection-columnsboolean
           Set this option on (Y) to print the sequence information into neat, aligned columns in the output
           file. Alternatively, leave it unset (N), in which case the information records will be delimited by a
           character, which you may specify by using the -delimiter option. In other words, if -columns is set
           on, the -delimiter option is overriden. Default value: Y

       -delimiterstring
           This string, which is usually a single character only, is used to delimit individual records in the
           text output file. It could be a space character, a tab character, a pipe character or any other
           character or string. Default value: |

   Outputsection-outfileoutfile
           If you enter the name of a file here then this program will write the sequence details into that
           file. Default value: stdout

       -htmlboolean
           Default value: N

       -onlyboolean
           This is a way of shortening the command line if you only want a few things to be displayed. Instead
           of specifying: '-nohead -noname -noacc -notype -nopgc -nodesc' to get only the length output, you can
           specify '-only -length' Default value: N

       -headingboolean
           Default value: Y

       -usaboolean
           Default value: @(!$(only))

       -databaseboolean
           Default value: @(!$(only))

       -nameboolean
           Default value: @(!$(only))

       -accessionboolean
           Default value: @(!$(only))

       -giboolean
           Default value: N

       -seqversionboolean
           Default value: N

       -typeboolean
           Default value: @(!$(only))

       -lengthboolean
           Default value: @(!$(only))

       -pgcboolean
           Default value: @(!$(only))

       -organismboolean
           Default value: @(!$(only))

       -descriptionboolean
           Default value: @(!$(only))

See Also

       infoseq is fully documented via the tfm(1) system.

Synopsis

infoseq-sequenceseqall-columnsboolean-delimiterstring [-outfileoutfile] [-htmlboolean]
               -onlyboolean-headingboolean-usaboolean-databaseboolean-nameboolean-accessionboolean-giboolean-seqversionboolean-typeboolean-lengthboolean-pgcboolean-organismboolean-descriptionbooleaninfoseq-help

See Also