infoseq - Display basic information about sequences
Contents
Bugs
Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to
the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).
Copyright
This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be
redistributed under the same terms as EMBOSS itself.
EMBOSS 6.4.0 05/11/2012 INFOSEQ(1e)
Description
infoseq is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It
is part of the "Data retrieval:Sequence data" command group(s).
Name
infoseq - Display basic information about sequences
Options
Inputsection-sequenceseqallAdvancedsection-columnsboolean
Set this option on (Y) to print the sequence information into neat, aligned columns in the output
file. Alternatively, leave it unset (N), in which case the information records will be delimited by a
character, which you may specify by using the -delimiter option. In other words, if -columns is set
on, the -delimiter option is overriden. Default value: Y
-delimiterstring
This string, which is usually a single character only, is used to delimit individual records in the
text output file. It could be a space character, a tab character, a pipe character or any other
character or string. Default value: |
Outputsection-outfileoutfile
If you enter the name of a file here then this program will write the sequence details into that
file. Default value: stdout
-htmlboolean
Default value: N
-onlyboolean
This is a way of shortening the command line if you only want a few things to be displayed. Instead
of specifying: '-nohead -noname -noacc -notype -nopgc -nodesc' to get only the length output, you can
specify '-only -length' Default value: N
-headingboolean
Default value: Y
-usaboolean
Default value: @(!$(only))
-databaseboolean
Default value: @(!$(only))
-nameboolean
Default value: @(!$(only))
-accessionboolean
Default value: @(!$(only))
-giboolean
Default value: N
-seqversionboolean
Default value: N
-typeboolean
Default value: @(!$(only))
-lengthboolean
Default value: @(!$(only))
-pgcboolean
Default value: @(!$(only))
-organismboolean
Default value: @(!$(only))
-descriptionboolean
Default value: @(!$(only))
See Also
infoseq is fully documented via the tfm(1) system.
Synopsis
infoseq-sequenceseqall-columnsboolean-delimiterstring [-outfileoutfile] [-htmlboolean]
-onlyboolean-headingboolean-usaboolean-databaseboolean-nameboolean-accessionboolean-giboolean-seqversionboolean-typeboolean-lengthboolean-pgcboolean-organismboolean-descriptionbooleaninfoseq-help