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kmc_tools-histogram - produce histogram of k-mer occurrences

Author

       KMC was originally written by:

       •   Sebastian Deorowicz (sebastian.deorowicz@polsl.pl)

       •   Marek Kokot

       •   Szymon Grabowski

       •   Agnieszka Debudaj-Grabysz

Copying

       KMC is a free software distributed under GNU GPL3 licence for academic, research, and commercial use.

                                                                                          KMC_TOOLS-HISTOGRAM(1)

Description

       This command produces a histogram of k-mer occurrences.

Example

           kmc_tools histogram wy_kmc2 -ci3 -cx1000 histo.txt

Name

       kmc_tools-histogram - produce histogram of k-mer occurrences

Options

       For each input there are additional parameters:

       -ci<value>
           exclude k-mers occurring less than <value> times

       -cx<value>
           exclude k-mers occurring more of than <value> times

Synopsis

kmc_toolshistogram <inputdb> [input_params] <output>

See Also