lmsba - Local voting.

       CMTK is developed with support from the NIAAA under Grant AA021697, National Consortium  on  Alcohol  and
       Neurodevelopment  in Adolescence (N-CANDA): Data Integration Component. From April 2009 through September
       2011, CMTK development and maintenance was supported by the NIBIB under Grant EB008381.

CMTK 3.3.1p2                                       Feb 26 2025                                          lmsba(1)

       Torsten  Rohlfing,  with  contributions from Michael P. Hasak, Greg Jefferis, Calvin R. Maurer, Daniel B.
       Russakoff, and Yaroslav Halchenko

       Report bugs at http://nitrc.org/projects/cmtk/

       This  tool  combines  multiple multi-class segmentations from co-registered and reformatted atlases using
       locally-weighted Shape-Based Averaging.

http://www.fsf.org/licensing/licenses/gpl.html

       lmsba - Local voting.

GlobalToolkitOptions(thesearesharedbyallCMTKtools)--help
            Write list of basic command line options to standard output.

       --help-all
            Write complete list of basic and advanced command line options to standard output.

       --wiki
            Write list of command line options to standard output in MediaWiki markup.

       --man
            Write man page source in 'nroff' markup to standard output.

       --version
            Write toolkit version to standard output.

       --echo
            Write the current command line to standard output.

       --verbose-level<integer>
            Set verbosity level.

       --verbose, -v
            Increment verbosity level by 1 (deprecated; supported for backward compatibility).

       --threads<integer>
            Set maximum number of parallel threads (for POSIX threads and OpenMP).

   InputOptions--set-padding-value<double>
            Set padding value for input intensity images. Pixels with this value  will  be  ignored.   [Default:disabled]LabelCombinationOptions--patch-radius<none>
            Radius of image patch (in pixels) used for local similarity computation.  [Default:5]--search-radius<none>
            Search  radius  for  local  image patch matching. The algorithm finds the best-matching patch within
            this radius by exhaustive search.  [Default:0]--no-local-outliers
            Detect and exclude local outliers in the Shape Based Averaging procedure.

       --no-global-outliers
            Detect and exclude global outliers  by  removing  poorly  correlated  atlases  prior  to  local  SBA
            procedure.

   OutputOptions--output<string>, -o<string>
            File system path for the output image.  [Default:lsbo.nii]

       lsba [options] targetImage atlasIntensity1 atlasLabels1 [atlasIntensity2 atlasLabels2 [...]]