mia-2dmyocard-segment - Work in progress

       Gert Wollny

       This  software is Copyright (c) 1999‐2015 Leipzig, Germany and Madrid, Spain.  It comes  with  ABSOLUTELY
       NO WARRANTY  and  you  may redistribute it under the terms of the GNU GENERAL PUBLIC  LICENSE  Version  3
       (or later). For more information run the program with the option '--copyright'.

USER COMMANDS                                        v2.4.7                             mia-2dmyocard-segment(1)

mia-2dmyocard-segment This program is work in progress

       Example

       mia-2dmyocard-segment Example

       mia-2dmyocard-segment - Work in progress

File-IO
              -i --in-file=(required, input); string
                     input perfusion data set

              -o --out-file=(required, output); io
                     output myocardial mask
                      For supported file types see PLUGINS:2dimage/io

              -f --save-features=(output); string
                     save ICA features to files with this name base

   Help&Info
              -V --verbose=warning
                     verbosity  of  output,  print  messages  of  given  level  and higher priorities. Supported
                     priorities starting at lowest level are:

                        trace ‐ Function call trace
                        debug ‐ Debug output
                        info ‐ Low level messages
                        message ‐ Normal messages
                        warning ‐ Warnings
                        fail ‐ Report test failures
                        error ‐ Report errors
                        fatal ‐ Report only fatal errors

                 --copyright
                     print copyright information

              -h --help
                     print this help

              -? --usage
                     print a short help

                 --version
                     print the version number and exit

   ICA
                 --fastica=internal
                     FastICA implementationto be used
                      For supported plugins see PLUGINS:fastica/implementation

              -C --components=0
                     ICA components 0 = automatic estimation testing 4 and 5

                 --normalize
                     normalized ICs

                 --no-meanstrip
                     don't strip the mean from the mixing curves

              -k --skip=2
                     skip images at the beginning of the series as they are of other modalities

              -m --max-ica-iter=400
                     maximum number of iterations in ICA

   Processing
                 --threads=-1
                     Maxiumum number of threads to use for processing,This number should be lower  or  equal  to
                     the number of logical processor cores in the machine. (-1: automatic estimation).

bmp       BMP  2D-image  input/output  support. The plug-in supports reading and writing of binary images
                 and 8-bit gray scale images. read-only support is provided for 4-bit  gray  scale  images.  The
                 color table is ignored and the pixel values are taken as literal gray scale values.

                     Recognized file extensions:  .BMP, .bmp

                     Supported element types:
                       binary data, unsigned 8 bit

       datapool  Virtual IO to and from the internal data pool

                     Recognized file extensions:  .@

       dicom     2D image io for DICOM

                     Recognized file extensions:  .DCM, .dcm

                     Supported element types:
                       signed 16 bit, unsigned 16 bit

       exr       a 2dimage io plugin for OpenEXR images

                     Recognized file extensions:  .EXR, .exr

                     Supported element types:
                       unsigned 32 bit, floating point 32 bit

       jpg       a 2dimage io plugin for jpeg gray scale images

                     Recognized file extensions:  .JPEG, .JPG, .jpeg, .jpg

                     Supported element types:
                       unsigned 8 bit

       png       a 2dimage io plugin for png images

                     Recognized file extensions:  .PNG, .png

                     Supported element types:
                       binary data, unsigned 8 bit, unsigned 16 bit

       raw       RAW 2D-image output support

                     Recognized file extensions:  .RAW, .raw

                     Supported element types:
                       binary data, signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned 16 bit, signed 32 bit,
                       unsigned 32 bit, floating point 32 bit, floating point 64 bit

       tif       TIFF 2D-image input/output support

                     Recognized file extensions:  .TIF, .TIFF, .tif, .tiff

                     Supported element types:
                       binary data, unsigned 8 bit, unsigned 16 bit, unsigned 32 bit

       vista     a 2dimage io plugin for vista images

                     Recognized file extensions:  .-, .V, .VISTA, .v, .vista

                     Supported element types:
                       binary data, signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned 16 bit, signed 32 bit,
                       unsigned 32 bit, floating point 32 bit, floating point 64 bit

internal  This is the MIA implementation of the FastICA algorithm.

                     (no parameters)

       itpp      This is the IT++ implementation of the FastICA algorithm.

                     (no parameters)

mia-2dmyocard-segment-i<in-file>-o<out-file>[options]