needle -

       Needle  allows  you  to  build  an  Interleaved  Bloom  Filter (IBF) with the command ibf or estimate the
       expression of transcripts with the command estimate.

needleCopyright: BSD 3-Clause License
       Author: Mitra Darvish
       SeqAnCopyright: 2006-2023 Knut Reinert, FU-Berlin; released under the 3-clause BSDL.
       Inyouracademicworkspleasecite: Needle: a fast  and  space-efficient  prefilter  for  estimating  the
       quantification  of very large collections of expression experiments; Mitra Darvish, Enrico Seiler, Svenja
       Mehringer, René Rahn, and Knut Reinert; Bioinformatics, Volume 38, Issue  17,  1  September  2022,  Pages
       4100-4108. doi: https://doi.org/10.1093/bioinformatics/btac492
       For full copyright and/or warranty information see --copyright.

needle 1.0.3                                       2024-11-07                                          NEEDLE(1)

       needle -

Basicoptions:-h, --help
              Prints the help page.

       -hh, --advanced-help
              Prints the help page including advanced options.

       --version
              Prints the version information.

       --copyright
              Prints the copyright/license information.

       --export-help (std::string)
              Export the help page information. Value must be one of [html, man].

       This program must be invoked with one of the following subcommands:
       - count
       - delete
       - estimate
       - genome
       - ibf
       - ibfmin
       - insert
       - insertmin
       - minimiser

       See the respective help page for further details (e.g. by calling needle count -h).

       The following options below belong to the top-level parser and need to be specified before the subcommand
       key word. Every argument after the subcommand key word is passed on to the corresponding sub-parser.

       https://github.com/seqan/needle

Lastupdate: 2024-11-07
       needleversion: 1.0.3
       SeqAnversion: 3.3.0