plotcon - Plot conservation of a sequence alignment

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EMBOSS 6.4.0                                       05/11/2012                                        PLOTCON(1e)

plotcon is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It
       is part of the "Alignment:Multiple" command group(s).

       plotcon - Plot conservation of a sequence alignment

Inputsection-sequencesseqset
           File containing a sequence alignment

       -scorefilematrix
           This is the scoring matrix file used when comparing sequences. By default it is the file 'EBLOSUM62'
           (for proteins) or the file 'EDNAFULL' (for nucleic sequences). These files are found in the 'data'
           directory of the EMBOSS installation.

   Requiredsection-winsizeinteger
           Number of columns to average alignment quality over. The larger this value is, the smoother the plot
           will be. Default value: 4

   Outputsection-graphxygraph

       plotcon is fully documented via the tfm(1) system.

plotcon-sequencesseqset [-scorefilematrix] -winsizeinteger-graphxygraphplotcon-help