plotHaps

       Erik Garrison and vcflib contributors.

plotHaps (vcflib)                                                                                    PLOTHAPS(1)

plotHaps provides the formatted output that can be used with `bin/plotHaplotypes.R'.

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       Copyright  2011-2024  (C)  Erik Garrison and vcflib contributors.  MIT licensed.  Copyright 2020-2024 (C)
       Pjotr Prins.

plotHaps

              Output : haplotype matrix and positions

              **plotHaps**  --target 0,1,2,3,4,5,6,7  --file my.phased.vcf.gz

              required: t,target     -- argument: a zero base comma separated list of target individuals corrisponding to VCF column s
              required: r,region     -- argument: a tabix compliant genomic range : "seqid:start-end" or "seqid"
              required: f,file       -- argument: proper formatted phased VCF file
              required: y,type       -- argument: genotype likelihood format: PL,GP,GP

              Type: statistics

vcflib(1)