polydot - Draw dotplots for all-against-all comparison of a sequence set

DebianMedPackagingTeam <debian-med-packaging@lists.alioth.debian.org>
           Wrote the script used to autogenerate this manual page.

       Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to
       the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

       This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be
       redistributed under the same terms as EMBOSS itself.

EMBOSS 6.4.0                                       05/11/2012                                        POLYDOT(1e)

polydot is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It
       is part of the "Alignment:Dot plots" command group(s).

       polydot - Draw dotplots for all-against-all comparison of a sequence set

Inputsection-sequencesseqset
           File containing a sequence alignment

   Requiredsection-wordsizeinteger
           Default value: 6

   Outputsection-gapinteger
           This specifies the size of the gap that is used to separate the individual dotplots in the display.
           The size is measured in residues, as displayed in the output. Default value: 10

       -boxitboolean
           Default value: Y

       -dumpfeattoggle
           Default value: N

       -outfeatfeatout-graphgraph

       polydot is fully documented via the tfm(1) system.

polydot-sequencesseqset-wordsizeinteger-gapinteger [-boxitboolean] [-dumpfeattoggle]
               -outfeatfeatout-graphgraphpolydot-help