pxboot - sequence alignment bootstrap or jackknife resampling

Author

       Written by Joseph W. Brown

Citation

       Brown, Joseph W., Joseph F. Walker, and Stephen A.  Smith.  2017.  Phyx:  phylogenetic  tools  for  unix.
       Bioinformatics 33(12): 1886-1888. https://doi.org/10.1093/bioinformatics/btx063.

Copyright

       Copyright © 2013-2024 FePhyFoFum License GPLv3

pxboot 1.3.1                                        June 2024                                          PXBOOT(1)

Description

       Sequence  alignment  bootstrap  or  jackknife resampling.  This will take fasta, fastq, phylip, and nexus
       formats from a file or STDIN.  Results are written in fasta format.

Name

       pxboot - sequence alignment bootstrap or jackknife resampling

Options

-s, --seqf=FILE
              input sequence file, STDIN otherwise

       -p, --partf=FILE
              file listing empirical partitions: NAME = START-STOP[\INTERVAL]

       -f, --frac=DOUBLE
              jackknife percentage, default bootstrap (i.e. -f 1.0)

       -x, --seed=INT
              random number seed, clock otherwise

       -o, --outf=FILE
              output sequence file, STOUT otherwise

       -h, --help
              display this help and exit

       -V, --version
              display version and exit

       -C, --citation
              display phyx citation and exit

Reporting Bugs

       Report      bugs      to:      <https://github.com/FePhyFoFum/phyx/issues>      phyx      home      page:
       <https://github.com/FePhyFoFum/phyx>