pxcontrates - continuous character rate estimation with Brownian and OU

Author

       Written by Stephen A. Smith (blackrim)

Citation

       Brown, Joseph W., Joseph F. Walker, and Stephen A.  Smith.  2017.  Phyx:  phylogenetic  tools  for  unix.
       Bioinformatics 33(12): 1886-1888. https://doi.org/10.1093/bioinformatics/btx063.

Copyright

       Copyright © 2013-2024 FePhyFoFum License GPLv3

pxcontrates 1.3.1                                   June 2024                                     PXCONTRATES(1)

Description

       Continuous  character  rate  estimation  with  Brownian  and OU.  This will take fasta, phylip, and nexus
       formats from a file or STDIN.

Name

       pxcontrates - continuous character rate estimation with Brownian and OU

Options

-c, --charf=FILE
              input character file, STDIN otherwise

       -t, --treef=FILE
              input tree file, STDIN otherwise

       -a, --analysis=NUM
              analysis type (0=anc[DEFAULT], 1=ratetest)

       -o, --outf=FILE
              output sequence file, STOUT otherwise

       -h, --help
              display this help and exit

       -V, --version
              display version and exit

       -C, --citation
              display phyx citation and exit

Reporting Bugs

       Report      bugs      to:      <https://github.com/FePhyFoFum/phyx/issues>      phyx      home      page:
       <https://github.com/FePhyFoFum/phyx>