pxnj - basic neighbour-joining tree maker
Contents
Citation
Brown, Joseph W., Joseph F. Walker, and Stephen A. Smith. 2017. Phyx: phylogenetic tools for unix.
Bioinformatics 33(12): 1886-1888. https://doi.org/10.1093/bioinformatics/btx063.
Copyright
Copyright © 2015-2021 FePhyFoFum License GPLv3
pxnj 1.2 June 2021 PXNJ(1)
Description
Basic neighbour-joining tree maker. This will take fasta, fastq, phylip, and nexus inputs from a file or
STDIN.
Name
pxnj - basic neighbour-joining tree maker
Options
-s, --seqf=FILE
input sequence file, STDIN otherwise
-n, --nthreads=INT
number of threads, default=1
-o, --outf=FILE
output newick file, STOUT otherwise
-h, --help
display this help and exit
-V, --version
display version and exit
-C, --citation
display phyx citation and exit
Reporting Bugs
Report bugs to: <https://github.com/FePhyFoFum/phyx/issues> phyx home page:
<https://github.com/FePhyFoFum/phyx>
Synopsis
pxnj [OPTIONS]...
