pxpoly - randomly sample polytomies to generate a binary tree
Contents
Citation
Brown, Joseph W., Joseph F. Walker, and Stephen A. Smith. 2017. Phyx: phylogenetic tools for unix.
Bioinformatics 33(12): 1886-1888. https://doi.org/10.1093/bioinformatics/btx063.
Copyright
Copyright © 2021-2024 FePhyFoFum License GPLv3
pxpoly 1.3.1 June 2024 PXPOLY(1)
Description
Randomly sample polytomies to generate a binary tree. Currently only works with rooted trees (checked)
Output is written in newick format.
Name
pxpoly - randomly sample polytomies to generate a binary tree
Options
-t, --treef=FILE
input tree file, STDIN otherwise
-x, --seed=INT
random number seed, clock otherwise
-o, --outf=FILE
output file, STOUT otherwise
-h, --help
display this help and exit
-V, --version
display version and exit
-C, --citation
display phyx citation and exit
Reporting Bugs
Report bugs to: <https://github.com/FePhyFoFum/phyx/issues> phyx home page:
<https://github.com/FePhyFoFum/phyx>
Synopsis
pxpoly [OPTIONS]...
