R_mds - project distance matrix into lower number of dimensions
Contents
Description
Projects distance matrix into lower number of dimensions Requires R and rhdf5 to be installed, see github
wiki for more details
Name
R_mds - project distance matrix into lower number of dimensions
Options
Required-d, --dist
Distance matrix output by kmds
-p, --pheno
Phenotype file used by seer
Optional-o, --output
Output prefix (default 'all_structure')
--pc Number of dimensions to project into (default 3)
-R R executable (default 'which R')
-h, --help
Displays this message
Synopsis
R_mds-k<filtered_kmers.txt>-p<pheno_file>
