Raptor - A fast and space-efficient pre-filter for querying very large collections of nucleotide

       Raptor is a system for approximately searching many queries such as next-generation sequencing  reads  or
       transcripts  in  large  collections of nucleotide sequences. Raptor uses winnowing minimizers to define a
       set of representative k-mers, an extension of the interleaved Bloom filters (IBFs) as  a  set  membership
       data  structure  and  probabilistic  thresholding  for  minimizers.  Our  approach allows compression and
       partitioning of the IBF to enable the effective use of secondary memory.

RaptorCopyright: BSD 3-Clause License
       Author: Enrico Seiler
       Contact:enrico.seiler@fu-berlin.deSeqAnCopyright: 2006-2023 Knut Reinert, FU-Berlin; released under the 3-clause BSDL.
       Inyouracademicworkspleasecite: Raptor: A fast and space-efficient pre-filter for querying very large
       collections of nucleotide sequences; Enrico Seiler, Svenja Mehringer, Mitra Darvish,  Etienne  Turc,  and
       Knut Reinert; iScience 2021 24 (7): 102782. doi: https://doi.org/10.1016/j.isci.2021.102782
       For full copyright and/or warranty information see --copyright.

raptor 3.0.1 (commit unavailable)                  Unavailable                                         RAPTOR(1)

       Raptor  -  A  fast  and  space-efficient  pre-filter  for  querying  very large collections of nucleotide
       sequences.

Commonoptions-h, --help
              Prints the help page.

       -hh, --advanced-help
              Prints the help page including advanced options.

       --version
              Prints the version information.

       --copyright
              Prints the copyright/license information.

       --export-help (std::string)
              Export the help page information. Value must be one of [html, man, ctd, cwl].

       This program must be invoked with one of the following subcommands:
       - build
       - layout
       - prepare
       - search
       - upgrade

       See the respective help page for further details (e.g. by calling Raptor build -h).

       The following options below belong to the top-level parser and need to be specified before the subcommand
       key word. Every argument after the subcommand key word is passed on to the corresponding sub-parser.

       https://github.com/seqan/raptor

Lastupdate: Unavailable
       Raptorversion: 3.0.1 (commit unavailable)
       Shargversion: 1.1.1
       SeqAnversion: 3.4.0-rc.3