reapr-gapresize - calculates gap sizes based on read mapping

       reapr-gapresize - calculates gap sizes based on read mapping

-g <int>
           Only consider gaps of at least this length [1]

reapr(1)

                                                                                              REAPR-GAPRESIZE(1)

reaprgapresize [options] <assembly.fasta> <in.bam> <avg-fragment-length> <max-fragment-length>
       <outfileprefix>