seqsero - Salmonella serotyping from genome sequencing data

       SeqSero was developed by Shaokang Zhang (zskzsk@uga.edu) and Xiangyu Deng (xdeng@uga.edu)

       Contact email:seqsero@gmail.com

       This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage
       of the program.

seqsero 1.0                                        April 2017                                         SEQSERO(1)

       seqsero - Salmonella serotyping from genome sequencing data

-h, --help
              show this help message and exit

       -m {1,2,3,4}
              <int>:  '1'(pair-end  reads,  interleaved),'2'(pair-end  reads,  seperated),'3'(single-end reads),
              '4'(assembly)

       -i I [I ...]
              <string>: path/to/input_data

       -b {sam,mem}
              <string>: 'sam'(bwa samse/sampe), 'mem'(bwa mem), default=sam

seqsero-m <data_type> -i <input_data> [-b <BWA_algorithm>]