seqwords - Generates DHF files from keyword search of UniProt.

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DOMSEARCH 0.1.0++20100721                          08/11/2010                                       SEQWORDS(1e)

seqwords is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It
       is part of the "Protein:3D Structure" command group(s).

       seqwords - Generates DHF files from keyword search of UniProt.

Inputsection-keyfileinfile
           This option specifies the name of keywords file (input). This contains a list of keywords specific to
           a number of SCOP or CATH families and superfamilies used by SEQWORDS to search a sequence database.

       -spfileinfile
           This option specifies the name of the sequence database (input) to search.

   Outputsection-outfileoutfile
           This option specifies the name of the DHF file (domain hits file) (output). A 'domain hits file'
           contains database hits (sequences) with domain classification information, in the DHF format
           (FASTA-like). The hits are relatives to a SCOP or CATH family (or other node in the structural
           hierarchies) and are found from a search of a sequence database. Files containing hits retrieved by
           PSIBLAST are generated by using SEQSEARCH, hits retrieved by a sparse protein signatare by using
           SIGSCAN or various types of HMM and profile by using LIBSCAN. Default value: test.hits

       seqwords is fully documented via the tfm(1) system.

seqwords-keyfileinfile-spfileinfile-outfileoutfileseqwords-help