showdb - Displays information on configured databases
Contents
Bugs
Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to
the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).
Copyright
This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be
redistributed under the same terms as EMBOSS itself.
EMBOSS 6.4.0 05/11/2012 SHOWDB(1e)
Description
showdb is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It
is part of the "Data resources" command group(s).
Name
showdb - Displays information on configured databases
Options
Inputsection-databasestringAdditionalsection-htmlboolean
Default value: N
-proteinboolean
Default value: Y
-nucleicboolean
Default value: Y
-sequenceboolean
Default value: Y
-featureboolean
Default value: Y
-textboolean
Default value: Y
-taxonomyboolean
Default value: Y
-resourceboolean
Default value: Y
-assemblyboolean
Default value: Y
-oboboolean
Default value: Y
-fullboolean
Default value: N
-methodsboolean
This displays the access methods that can be used on this database, for all, query or ID access
Default value: $(full)
-fieldsboolean
This displays the search fields that can be used on this database, other than the standard 'id' or
'acc' fields. Default value: $(full)
-definedboolean
This displays a short name for the file containing the database definition Default value: $(full)
-releaseboolean
Default value: $(full)
Advancedsection-onlytoggle
This is a way of shortening the command line if you only want a few standard columns to be displayed.
Instead of specifying: '-nohead -notype -noid -noquery -noall' to get only the comment output, you
can specify '-only -comment' Default value: N
-headingboolean
Default value: @(!$(only))
-typeboolean
Default value: @(!$(only))
-idboolean
Default value: @(!$(only))
-queryboolean
Default value: @(!$(only))
-allboolean
Default value: @(!$(only))
-commentboolean
Default value: @(!$(only))
Outputsection-outfileoutfile
Default value: stdout
See Also
showdb is fully documented via the tfm(1) system.
Synopsis
showdb [-databasestring] [-htmlboolean] [-proteinboolean] [-nucleicboolean] [-sequenceboolean]
[-featureboolean] [-textboolean] [-taxonomyboolean] [-resourceboolean] [-assemblyboolean]
[-oboboolean] [-fullboolean] [-methodsboolean] [-fieldsboolean] [-definedboolean]
[-releaseboolean] -onlytoggle-headingboolean-typeboolean-idboolean-queryboolean-allboolean-commentboolean [-outfileoutfile]
showdb-help