tree-mean-lengths - Compute the mean lengths for branches in the given topology.

-h, –help
              produce help message

       -Targ, –treearg
              tree to re-root

       –filesarg
              tree samples to examine

       -sarg (=0), –skiparg (=0)
              number of tree samples to skip

       -uarg, –untilarg
              Read until this number of trees.

       –ignorearg
              Comma-separated taxa to remove

       –simple
              Ignore all branches not in the query tree

       -xarg (=1), –subsamplearg (=1)
              factor by which to sub-sample

       –var   report standard deviation of branch lengths instead of mean

       –no-node-lengths
              ignore branches not in the specified topology

       –safe  Don’t die if no trees match the topology

       –show-node-lengths
              Output special format

       -V, –verbose
              Output more log messages on stderr.

       Benjamin Redelings.

                                                    Feb 2018                                tree-mean-lengths(1)

       Compute the mean lengths for branches in the given topology.

tree-mean-lengths - Compute the mean lengths for branches in the given topology.

       BAli-Phy online help: <http://www.bali-phy.org/docs.php>.

       Please send bug reports to <bali-phy-users@googlegroups.com>.

tree-mean-lengths [OPTIONS] treefile1 [file2 ...]