tree-tool - Perform various operations on Newick trees.

       Benjamin Redelings.

                                                    Feb 2018                                        tree-tool(1)

       Perform various operations on Newick trees.

-h, –help
              produce help message

       -V, –verbose
              Output more log messages on stderr.

–prunearg
              Comma-separated taxa to remove

       –resolve
              Comma-separated taxa to remove

       –remove-root-branch
              Remove single branch from root.

       –remove-root-branches
              Ensure root is not a tip.

       –remove-knuckles
              Remove degree-2 nodes.

       –scalearg
              Scale branch-lengths by factor

       –strip-internal-names
              Remove internal node names

       –name-all-nodes
              Add node names

tree-tool - Perform various operations on Newick trees.

–length
              Report the total tree length

       –diameter
              Report the total tree length

       BAli-Phy online help: <http://www.bali-phy.org/docs.php>.

       Please send bug reports to <bali-phy-users@googlegroups.com>.

tree-tooltree-file [OPTIONS]