trees-bootstrap - Compare support for partitions between different files.

       Benjamin Redelings.

                                                    Feb 2018                                  trees-bootstrap(1)

–bootstrap
              Do block bootstrapping to get a CI on the posterior probabilities.

       –samplesarg (=10000)
              Number of bootstrap samples.

       –pseudocountarg (=1)
              Extra 0/1 to add to bootstrap samples.

       –blocksizearg
              Block size to use in block boostrap.

       –seedarg
              Random seed.

       Compare support for partitions between different files.

-h, –help
              Produce help message.

       -sarg (=10%), –skiparg (=10%)
              Number of trees to skip.

       -uarg, –untilarg
              Read until this number of trees.

       -marg, –maxarg
              Thin tree samples down to this number of trees.

       -xarg, –subsamplearg
              Factor by which to sub-sample.

       –predicatesarg
              Predicates to examine.

       –min-supportarg (=0.1)
              Minimum value of predicates to consider interesting..

       -V, –verbose
              Output more log messages on stderr.

trees-bootstrap - Compare support for partitions between different files.

       BAli-Phy online help: <http://www.bali-phy.org/docs.php>.

       Please send bug reports to <bali-phy-users@googlegroups.com>.

–separationarg (=0)
              Only report trees/partitions if they differ by this many LODs

       –confidencearg (=0.95)
              Width of confidence intervals

       –LOD-tablearg
              Write the partitions LOD10’s to a file.

trees-bootstrapfile1 [file2 ...  ] –predicates predicatefile [OPTIONS]