wordmatch - Finds regions of identity (exact matches) of two sequences

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EMBOSS 6.4.0                                       05/11/2012                                      WORDMATCH(1e)

wordmatch is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”).
       It is part of the "Alignment:Local" command group(s).

       wordmatch - Finds regions of identity (exact matches) of two sequences

Inputsection-asequenceseqset-bsequenceseqallRequiredsection-wordsizeinteger
           Default value: 4

   Outputsection-dumpaligntoggle
           Default value: Y

       -outfilealign-logfileoutfile
           Statistics on distribution of kmers and matches Default value: wordmatch.log

       -dumpfeattoggle
           Default value: Y

       -aoutfeatfeatout-boutfeatfeatout

       wordmatch is fully documented via the tfm(1) system.

wordmatch-asequenceseqset-bsequenceseqall-wordsizeinteger [-dumpaligntoggle] -outfilealign
                 [-logfileoutfile] [-dumpfeattoggle] -aoutfeatfeatout-boutfeatfeatoutwordmatch-help