logo
Free, unlimited AI code reviews that run on commit
git-lrc git-lrc GitHub Install Now We'd appreciate a star git-lrc - Free, unlimited AI code reviews that run on commit | Product Hunt git-lrc - Free, unlimited AI code reviews that run on commit | Product Hunt

efilter - filter and/or sort NCBI Entrez search results

Description

efilter filters and/or sorts results from a previous Entrez Direct search.

Name

       efilter - filter and/or sort NCBI Entrez search results

Options

QuerySpecification-querystr
              Limit results to those matching the given query string.

   DateConstraint-daysN
              Keep only results from the past N days.

       -datetypefield
              Which date field (in abbreviated form) to consider.

       -mindatedate
              Start of date range.

       -maxdatedate
              End of date range.

   PublicationFilters-pubtypeabstract, clinical, english, free, historical, journal, medline, preprint,  published,  retracted,
              retraction, review, or structured.

       -journalnamepnas, "jbacteriol", ...

       -releasedwhenlast_week, last_month, last_year, or prev_years.

   SequenceFilters-countrynameusa:minnesota, united_kingdom, "pacificocean", ...

       -featuretypegene, mrna, cds, mat_peptide, ...

       -locationtypemitochondrion, chloroplast, plasmid, or plastid.

       -moleculetypegenomic, mrna, trna, rrna, or ncrna.

       -organismtypeanimals,  archaea,  bacteria,  eukaryotes,  fungi,  human,  insects, mammals, plants, prokaryotes,
              protists, rodents, viruses, ...

       -sourcetypegenbank, insd, pdb, pir, refseq, select, swissprot, or tpa.-divisioncode
              Three-letter GenBank division code: bct, con, env, est, gss, htc, htg, inv, mam,  pat,  phg,  pln,
              pri, rod, sts, syn, una, vrl, or vrt.

       -keywordpurpose-purposewhybaseline or targeted.GeneFilters-statusalive-typetypecoding or pseudo.

   SNPFilters-classclassacceptor, donor, coding, frameshift, indel, intron, missense, nonsense, or synonymous.

   AssemblyFilters-statusstatuslatest or replaced.

   MiscellaneousArguments-help  Print usage information.

See Also

combine-uid-lists(1),     difference-uid-lists(1),     esearch(1),    nquire(1),    exclude-uid-lists(1),
       intersect-uid-lists(1).

NCBI                                               2023-02-18                                         EFILTER(1)

Synopsis

efilter  [-help]  [-querystr]  [-daysN]  [-datetypefield]  [-mindatedate] [-maxdatedate] [-pubtype]
       [-journalname]  [-releasedwhen]  [-countryname]  [-featuretype]   [-locationtype]   [-moleculetype]
       [-organismtype]   [-sourcetype]   [-divisioncode]  [-keywordpurpose]  [-purposewhy]  [-statusalive]
       [-typetype] [-classclass]

See Also