insdseqget - format sequences from GenBank as an XML INSDSet
Contents
Description
insdseqget retrieves biological sequence data from GenBank (according to an input list of GI accession
numbers) and prints it out as an XML INSDSet document.
Name
insdseqget - format sequences from GenBank as an XML INSDSet
Options
A summary of options is included below.
- Print usage message
-dfilename
Input file name for date list (desired accessions, one per line, followed by a blank line and a
list of allowed dates, also one per line)
-ifilename
Input file name for GI list (default = stdin)
-mn/p/b
Molecule type:
n Nucleotide (default)
p Protein
b Both
-n Return only new records (for which the given GI refers to an old version)
-ofilename
Output file name for the XML INSDSet (default = stdout)
-v Fetch SNP Variations
See Also
asn2gb(1), gbseqget(1). NCBI 2006-04-14 INSDSEQGET(1)
Synopsis
insdseqget [-] [-dfilename] [-ifilename] [-mn/p/b] [-n] [-ofilename] [-v]
