nquire - query NCBI Entrez Utilities, other parameter-based web services, or FTP
Contents
Description
nquire performs raw HTTP(S) queries against web services such as NCBI E-Utilities that take GET or POST
parameters, or downloads or listings from FTP and Aspera servers. (Aspera support requires installing
proprietary client software.)
Name
nquire - query NCBI Entrez Utilities, other parameter-based web services, or FTP
Options
Documentation-help Print usage information, complete with a few examples, some additionally illustrating the use of
xtract(1).
QueryCommands-ftphostdir [file]
Use FTP instead of HTTP. The shell implementation accepts a filename on the command line only
when invoked from a (pseudo)terminal, and otherwise reads filenames from standard input.
-urlURL
Base URL for external search.
-get [URL]
Use HTTP(S) GET instead of POST.
-lenURL
Content length of HTTP file.
-lsthostdir
Lists contents of FTP site.
-dirhostdir
FTP listing with file sizes.
FileDownloads-dwnhostdir [file]
Like -ftp, but saves contents to correspondingly named files in the current directory.
-asphostdir [file]
Like -dwn, but uses Aspera's proprietary client if installed.
-urlShortcuts-ncbi https://www.ncbi.nlm.nih.gov
-eutils https://eutils.ncbi.nlm.nih.gov/entrez/eutils
-pubchem https://pubchem.ncbi.nlm.nih.gov
-pugrest https://pubchem.ncbi.nlm.nih.gov/rest/pug
-pugview https://pubchem.ncbi.nlm.nih.gov/rest/pug_view
URLAdditionscomponent
Add /component to the base URL. (Must precede any tag/value pairs.)
-tagvalue ...
Add &tag=value,... to the base URL. (Must follow any simple components.)
Miscellaneous-examples
Examples of advanced queries.
-version
Print version number.
See Also
cit2pmid(1), curl(1), download-ncbi-data(1), download-ncbi-software(1), download-pmc(1), download-pubmed(1), edict(1), efetch(1), efilter(1), einfo(1), elink(1), esearch(1), wget(1), xtract(1). NCBI 2023-02-25 NQUIRE(1)
Synopsis
nquire [-help] [-ftphostdir [file]] [-urlURL] [-get [URL]] [-lenURL] [-lsthostdir] [-dirhostdir]
[-eutilsname] [-dwnhostdir [file]] [-asphostdir [file]] [-ncbi|-eutils|-pubchem|-pugrest|-pugview]
[component ...] [-tagvalue ...] [-examples] [-version]
