Blast-Radius Aware AI Code Review for Business-Critical Systems
LiveReview LiveReview Explore LiveReview

pxmrca - get number of descendant tips of internal nodes by mrca statements

Author

       Written by Stephen A. Smith (blackrim)

Citation

       Brown,  Joseph  W.,  Joseph  F.  Walker,  and  Stephen A. Smith. 2017. Phyx: phylogenetic tools for unix.
       Bioinformatics 33(12): 1886-1888. https://doi.org/10.1093/bioinformatics/btx063.

Description

       Get  the  number  of  descendant  tips  of internal nodes specified by mrca statements.  This will take a
       newick- or nexus-formatted tree from a file or STDIN, and an MRCA file with format: MRCANAME = tip1  tip2
       ...

Name

       pxmrca - get number of descendant tips of internal nodes by mrca statements

Options

-t, --treef=FILE
              input newick tree file, STDIN otherwise

       -m, --mrca=FILE
              file containing MRCA declarations

       -o, --outf=FILE
              output newick file, STOUT otherwise

       -h, --help
              display this help and exit

       -V, --version
              display version and exit

       -C, --citation
              display phyx citation and exit

Reporting Bugs

       Report      bugs      to:      <https://github.com/FePhyFoFum/phyx/issues>      phyx      home      page:
       <https://github.com/FePhyFoFum/phyx>

Synopsis

pxmrca [OPTIONS]...

See Also