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pxt2new - convert from tree file to newick format

Author

       Written by Stephen A. Smith (blackrim)

Citation

       Brown,  Joseph  W.,  Joseph  F.  Walker,  and  Stephen A. Smith. 2017. Phyx: phylogenetic tools for unix.
       Bioinformatics 33(12): 1886-1888. https://doi.org/10.1093/bioinformatics/btx063.

Description

       This will convert a tree file to newick.  This will take a newick- or nexus-formatted tree from a file or
       STDIN.

Name

       pxt2new - convert from tree file to newick format

Options

-t, --treef=FILE
              input tree file, STDIN otherwise

       -o, --outf=FILE
              output tree file, STOUT otherwise

       -h, --help
              display this help and exit

       -V, --version
              display version and exit

       -C, --citation
              display phyx citation and exit

Reporting Bugs

       Report      bugs      to:      <https://github.com/FePhyFoFum/phyx/issues>      phyx      home      page:
       <https://github.com/FePhyFoFum/phyx>

Synopsis

pxt2new [OPTIONS]...

See Also