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pyensembl - installs data from the Ensembl genome database

Author

        This manpage was written by Nilesh Patra for the Debian distribution and
        can be used for any other usage of the program.

pyensembl 1.9.1+ds                                  May 2021                                        PYENSEMBL(1)

Description

       usage: Manipulate pyensembl's local cache.

              pyensembl {install, delete, delete-sequence-cache} [--release XXX --species human...]

   ToinstallparticularEnsemblhumanrelease(s):
              pyensembl install --release 75 77

   ToinstallparticularEnsemblmouserelease(s):
              pyensembl install --release 75 77 --species mouse

   TodeletealldownloadedandcacheddataforaparticularEnsemblrelease:
              pyensembl delete-all-files --release 75 --species human

   Todeleteonlycacheddatarelatedtotranscriptandproteinsequences:
              pyensembl delete-index-files --release 75

   Tolistallinstalledgenomes:
              pyensembl list

   Toinstallagenomefromsourcefiles:
       pyensembl install
              --reference-name  "GRCh38"   --gtf  URL_OR_PATH   --transcript-fasta  URL_OR_PATH  --protein-fasta
              URL_OR_PATH

       pyensembl: error: the following arguments are required: action

Name

       pyensembl - installs data from the Ensembl genome database

See Also