usage: Manipulate pyensembl's local cache.
pyensembl {install, delete, delete-sequence-cache} [--release XXX --species human...]
ToinstallparticularEnsemblhumanrelease(s):
pyensembl install --release 75 77
ToinstallparticularEnsemblmouserelease(s):
pyensembl install --release 75 77 --species mouse
TodeletealldownloadedandcacheddataforaparticularEnsemblrelease:
pyensembl delete-all-files --release 75 --species human
Todeleteonlycacheddatarelatedtotranscriptandproteinsequences:
pyensembl delete-index-files --release 75
Tolistallinstalledgenomes:
pyensembl list
Toinstallagenomefromsourcefiles:
pyensembl install
--reference-name "GRCh38" --gtf URL_OR_PATH --transcript-fasta URL_OR_PATH --protein-fasta
URL_OR_PATH
pyensembl: error: the following arguments are required: action