allpairs_master - executes All-Pairs workflow in parallel on distributed systems

       The Cooperative Computing Tools are Copyright (C) 2022 The University of Notre Dame.   This  software  is
       distributed under the GNU General Public License.  See the file COPYING for details.

allpairs_master  computes  the  Cartesian  product of two sets (<setA>and<setB>),generatingamatrixwhereeachcellM[i,j]containstheoutputofthefunctionF(<comparefunction>)onobjectsA[i](anitemin<setA>)andB[j](anitemin<setB>).Theresultingmatrixisdisplayedonthestandardoutput,onecomparisonresultperlinealongwiththeassociatedXandYindices.allpairs_master uses the Work Queue system to distribute tasks among processors.  Each processor utilizes
       the  allpairs_multicore(1)  program to execute the tasks in parallel if multiple cores are present. After
       starting allpairs_master, you must start a number of work_queue_worker(1) processes on  remote  machines.
       The workers will then connect back to the master process and begin executing tasks.

       Let's suppose you have a whole lot of files that you want to compare all to each other, named  a,  b,  c,
       and  so  on. Suppose that you also have a program named compareit that when invoked as compareit a b will
       compare files a and b and produce some output summarizing the difference between the two, like this:

                a b are 45 percent similar

       To use the allpairs framework, create a file called set.list that lists each of your files, one per line:

                a
                b
                c
                ...

       Because allpairs_master utilizes allpairs_multicore(1), so please make sure allpairs_multicore(1)  is  in
       your  PATH  before  you proceed.To run a All-Pairs workflow sequentially, start a single work_queue_work‐er(1) process in the background. Then, invoke allpairs_master.

                % work_queue_worker localhost 9123 &
                % allpairs_master set.list set.list compareit

       The framework will carry out all possible comparisons of the objects, and print the results  one  by  one
       (note that the first two columns are X and Y indices in the resulting matrix):

                1    1    a a are 100 percent similar
                1    2    a b are 45 percent similar
                1    3    a c are 37 percent similar
                ...

       To  speed  up  the process, run more work_queue_worker(1) processes on other machines, or use condor_sub‐mit_workers(1) or uge_submit_workers(1) to start hundreds of workers in your local batch system.

       The following is an example of adding more workers to execute a All-Pairs  workflow.  Suppose  your  all‐pairs_master  is running on a machine named barney.nd.edu. If you have access to login to other machines,
       you could simply start worker processes on each one, like this:

                % work_queue_worker barney.nd.edu 9123

       If you have access to a batch system like Condor, you can submit multiple workers at once:

                % condor_submit_workers barney.nd.edu 9123 10
                Submitting job(s)..........
                Logging submit event(s)..........
                10 job(s) submitted to cluster 298.

       On success, returns zero.  On failure, returns non-zero.

allpairs_master - executes All-Pairs workflow in parallel on distributed systems

-p,--port=<port>
              The port that the master will be listening on.

        -e,--extra-args=<args>
              Extra arguments to pass to the comparison function.

        -f,--input-file=<file>
              Extra input file needed by the comparison function. (may be given multiple times)

        -o,--debug-file=<file>
              Write  debugging output to this file. By default, debugging is sent to stderr (":stderr"). You may
              specify logs to be sent to stdout (":stdout") instead.

        -O,----output-file=<file>
              Write task output to this file (default to standard output)

        -t,--estimated-time=<seconds>
              Estimated time to run one comparison. (default chosen at runtime)

        -x,--width=<item>
              Width of one work unit, in items to compare. (default chosen at runtime)

        -y,--height=<items>
              Height of one work unit, in items to compare. (default chosen at runtime)

        -N,--project-name=<project>
              Report the master information to a catalog server with the project name - <project>-P,--priority=<integer>
              Priority. Higher the value, higher the priority.

        -d,--debug=<flag>
              Enable debugging for this subsystem. (Try -d all to start.)

        -v,--version
              Show program version.

        -h,--help
              Display this message.

        -Z,--port-file=<file>
              Select port at random and write it to this file.  (default is disabled)

        --work-queue-preferred-connection=<connection>
              Indicate preferred connection. Chose one of by_ip or by_hostname. (default is by_ip)

       •   The Cooperative Computing Tools ("http://ccl.cse.nd.edu/software/manuals")

       •   All-Pairs User Manual ("http://ccl.cse.nd.edu/software/manuals/allpairs.html")

       •   Work Queue User Manual ("http://ccl.cse.nd.edu/software/manuals/workqueue.html")

       •   work_queue_worker(1)

       •   condor_submit_workers(1)

       •   uge_submit_workers(1)

       •   allpairs_multicore(1)

CCTools 7.14.5 FINAL                                                                          allpairs_master(1)

       allparis_master [options] <setA><setB><comparefunction>