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bp_extract_feature_seq - extract the corresponding sequence for a specified feature type

Author

        Jason Stajich <jason-at-bioperl-dot-org>

perl v5.32.1                                       2021-08-15                         BP_EXTRACT_FEATURE_SEQ(1p)

Description

       This script will extract the sequence for all the features you specify.

Feedback

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Name

       bp_extract_feature_seq - extract the corresponding sequence for a specified feature type

Options

-i, --input
           Specifies the sequence file to be read.

       --format
           Format  of  the file specified by --input. If not given, it will try to guess the correct format from
           the file extension.

       --feature
           Feature to be extracted. By default, it extracts the CDS feature.

       -o, --output
           File where the extracted features will be saved. If not specified, STDOUT is used.

Synopsis

       bp_extract_feature_seq [--format FORMAT] [--feature CDS] [--output FILE] [--input] FILE

See Also