runMetaBat.sh - Wrapper for MetaBAT

        This manpage was written by Andreas Tille for the Debian distribution and
        can be used for any other usage of the program.

runMetaBat.sh 2.15                                  May 2020                                    RUNMETABAT.SH(1)

runMetaBat.sh<selectmetabatoptions>assembly.fasample1.bam[sample2.bam...]

       runMetaBat.sh - Wrapper for MetaBAT

       You can specify any metabat options EXCEPT:

       -i--inFile-o--outFile-a--abdFile

       Also for depth calculations stage only, you can set the following environmental variables:

       PCTID=97
              -- reads below this threshold will be discarded

       BADMAP=0
              -- output the discarded reads to a sub directory

       MINDEPTH=1.0
              -- require contigs to have this minimum depth to be output

       For full metabat options: metabat2 -h