vcfcheck

Authors

       Erik Garrison and vcflib contributors.

vcfcheck (vcflib)                                                                                    VCFCHECK(1)

Description

       Validate  integrity and identity of the VCF by verifying that the VCF record’s REF matches a given refer‐
       ence file.

Exit Values

0      Success

       not0  Failure

License

       Copyright 2011-2024 (C) Erik Garrison and vcflib contributors.  MIT licensed.   Copyright  2020-2024  (C)
       Pjotr Prins.

Name

vcfcheck

Options

              options:

                  -f, --fasta-reference  FASTA reference file to use to obtain primer sequences.
                  -x, --exclude-failures If a record fails, don't print it.  Otherwise do.
                  -k, --keep-failures    Print if the record fails, otherwise not.
                  -i, --ignore-case      Ignore case differences between FASTA reference and vcf.
                  -h, --help             Print this message.
                  -v, --version          Print version.

              Type: metrics