reroot - Compute a (new) root for the tree.

       This program reroots the trees in <treefile> on an selected edge.

       The default is to output a random rerooting, but you can also choose to give the edge to put the root on,
       or an outgroup, or even all possible rootings.

       Output  is  written  to  stdout unless the exhaustive rooting is chosen. Then -o is giving the prefix for
       filenames to use and the results are written to <prefix>_<n>.tree, where <n> is the node  number  of  the
       head of the edge.

       Warning! In the current implementation all time/length info is lost.

0      Successful program execution.

       1      Some error occurred

       reroot - Compute a (new) root for the tree.

--help Display help

       -V, --version
              Print version and exit

       -S, --read-tree-from-stdin
              read tree from STDIN (no <tree-file>)

       -f, --input-format prime|inputxml
              The input format. Default is prime

       -e, --exhaustive
              Do all possible rootings

       -o, --output-file-prefixfile-prefix
              The stem for filenames

       -n, --node-indexINT
              Reroot tree at edge leading to node

       -g, --outgroupSTRING
              Root tree at smallest subtree containing the leaves listed in a commaseparated arguments

primeDTLSR(1),  primeDLRS(1),  primeGEM(1),  chainsaw(1),  reconcile(1),  showtree(1), tree2leafnames(1),
       treesize(1)

prime-phylo 1.0.11                                13 Mar, 2012                                         reroot(1)

reroot [OPTIONS] tree-file

       The prime-phylo home page: http://prime.sbc.su.se