ct2db - manual page for ct2db 2.6.4

       ct2db 2.6.4

       Produce dot bracket notation of an RNA secondary structure from Zuker's .ct file

       This program converts connectivity table (.ct) files into extended FASTA format with dot-bracket string.

       -h, --help
              Print help and exit

       -V, --version
              Print version and exit

       -p, --no-pk
              Remove pseudoknots from structure

              (default=off)

       -m, --no-modified
              Do not keep modified bases, i.e. replace all non-canonical nucleotides with N.

              (default=off)

       -v, --verbose
              Be verbose.

              (default=off)

       ct2db - manual page for ct2db 2.6.4

Ifyouusethisprograminyourworkyoumightwanttocite:

       R.  Lorenz,  S.H. Bernhart, C. Hoener zu Siederdissen, H. Tafer, C. Flamm, P.F. Stadler and I.L. Hofacker
       (2011), "ViennaRNA Package 2.0", Algorithms for Molecular Biology: 6:26

       I.L. Hofacker, W. Fontana, P.F. Stadler, S. Bonhoeffer, M. Tacker, P. Schuster (1994), "Fast Folding  and
       Comparison of RNA Secondary Structures", Monatshefte f. Chemie: 125, pp 167-188

       R.  Lorenz,  I.L. Hofacker, P.F. Stadler (2016), "RNA folding with hard and soft constraints", Algorithms
       for Molecular Biology 11:1 pp 1-13

       If in doubt our program is right, nature is at fault.  Comments should be sent to rna@tbi.univie.ac.at.

ct2db 2.6.4                                       January 2025                                          CT2DB(1)

ct2db [OPTIONS] [<input0.ct>] [<input1.ct>]...