FilterSeq.py - Filters sequences in FASTA/FASTQ files

        This manpage was written by Andreas Tille for the Debian distribution and
        can be used for any other usage of the program.

FilterSeq.py 0.6.0                                  May 2020                                     FILTERSEQ.PY(1)

       usage: FilterSeq.py [--version] [-h]  ...

       Filters sequences in FASTA/FASTQ files

   help:--version
              show program's version number and exit

       -h, --help
              show this help message and exit

   subcommands:
              Filtering operation

       length Filters reads by length.

       missing
              Filters reads by N or gap character count.

       repeats
              Filters reads by consecutive nucleotide repeats.

       quality
              Filters reads by quality score.

       maskqual
              Masks low quality positions.

       trimqual
              Trims sequences by quality score decay.

   outputfiles:
              <command>-pass

              reads  passing  filtering  operation  and modified accordingly, where <command> is the name of the
              filtering operation that was run.

              <command>-fail

              raw reads failing filtering criteria, where <command> is the name of the filtering operation.

   outputannotationfields:
              None

       FilterSeq.py - Filters sequences in FASTA/FASTQ files