vcfentropy

Authors

       Erik Garrison and vcflib contributors.

vcfentropy (vcflib)                                                                                VCFENTROPY(1)

Description

       Annotate  VCF  records with the Shannon entropy of flanking sequence.  Anotates the output VCF file with,
       for each record, EntropyLeft, EntropyRight, EntropyCenter, which are the entropies of the sequence of the
       given window size to the left, right, and center of the record.  Also adds EntropyRef and EntropyAlt  for
       each alt.

Exit Values

0      Success

       not0  Failure

License

       Copyright  2011-2024  (C)  Erik Garrison and vcflib contributors.  MIT licensed.  Copyright 2020-2024 (C)
       Pjotr Prins.

Name

vcfentropy

Options

              options:
                  -f, --fasta-reference  FASTA reference file to use to obtain flanking sequences
                  -w, --window-size      Size of the window over which to calculate entropy

              Type: metrics