vcfstreamsort

Authors

       Erik Garrison and vcflib contributors.

vcfstreamsort (vcflib)                                                                          VCFSTREAMSORT(1)

Description

       Sorts  the input (either stdin or file) using a streaming sort algorithm.  Guarantees that the positional
       order is correct provided out-of-order variants are no more than 100 positions in the VCF file apart.

Exit Values

0      Success

       not0  Failure

License

       Copyright 2011-2024 (C) Erik Garrison and vcflib contributors.  MIT licensed.   Copyright  2020-2024  (C)
       Pjotr Prins.

Name

vcfstreamsort

Options

              options:

                  -h, --help             this dialog
                  -w, --window N         number of sites to sort (default 10000)
                  -a, --all              load all sites and then sort in memory

              Type: transformation