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Bio::Roary::External::Blastp - Wrapper around NCBIs blastp command

Author

       Andrew J. Page <ap13@sanger.ac.uk>

Methods

result_file
       Returns the path to the results file

Name

       Bio::Roary::External::Blastp - Wrapper around NCBIs blastp command

Synopsis

       Wrapper around NCBIs blastp command

          use Bio::Roary::External::Blastp;

          my $blast_database= Bio::Roary::External::Blastp->new(
            fasta_file => 'contigs.fa',
            blast_database => 'db',
            exec       => 'blastp',
            output_file => 'results.out'
          );

          $blast_database->run();

Version

       version 3.13.0

See Also