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biom - Biological Observation Matrix (BIOM) format (Python 3)

Author

        This manpage was written by Nilesh Patra for the Debian distribution and
        can be used for any other usage of the program.

biom 2.1.8                                          July 2020                                            BIOM(1)

Name

       biom - Biological Observation Matrix (BIOM) format (Python 3)

Options

--version
              Show the version and exit.

       -h, --help
              Show this message and exit.

   Commands:
       add-metadata
              Add metadata to a BIOM table.

       convert
              Convert to/from the BIOM table format.

       export-metadata
              Export metadata as TSV.

       from-uc
              Create a BIOM table from a vsearch/uclust/usearch BIOM...

       head   Dump the first bit of a table.

       normalize-table
              Normalize a BIOM table.

       show-install-info
              Provide information about the biom-format installation.

       subset-table
              Subset a BIOM table.

       summarize-table
              Summarize sample or observation data in a BIOM table.

       table-ids
              Dump IDs in a table.

       validate-table
              Validate a BIOM-formatted file.

Synopsis

biom [OPTIONS] COMMAND [ARGS]...

See Also