domainrep - Reorder DCF file to identify representative structures.

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DOMALIGN 0.1.0+20100721                            08/11/2010                                      DOMAINREP(1e)

domainrep is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”).
       It is part of the "Protein:3D Structure" command group(s).

       domainrep - Reorder DCF file to identify representative structures.

Inputsection-dcfinfileinfile
           This option specifies the name of DCF file (domain classification file) (input). A 'domain
           classification file' contains classification and other data for domains from SCOP or CATH, in DCF
           format (EMBL-like). The files are generated by using SCOPPARSE and CATHPARSE. Domain sequence
           information can be added to the file by using DOMAINSEQS.

   Requiredsection-nodelist
           This option specifies the node fore reordering the file. Reordering can be done for any specified
           node in the SCOP or CATH hierarchies. For example by selecting 'Class' entries belonging to the same
           Class will be reordered in turn. Default value: 1

   Outputsection-dcfoutfileoutfile
           This option specifies the name of DCF file (domain classification file) (output). A 'domain
           classification file' contains classification and other data for domains from SCOP or CATH, in DCF
           format (EMBL-like). The files are generated by using SCOPPARSE and CATHPARSE. Domain sequence
           information can be added to the file by using DOMAINSEQS. Default value: test.scop

       domainrep is fully documented via the tfm(1) system.

domainrep-dcfinfileinfile-nodelist-dcfoutfileoutfiledomainrep-help