domainreso - Remove low resolution domains from a DCF file.

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DOMAINATRIX 0.1.0+20100721                         08/11/2010                                     DOMAINRESO(1e)

domainreso is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”).
       It is part of the "PROTEIN:3D STRUCTURE" command group(s).

       domainreso - Remove low resolution domains from a DCF file.

Inputsection-cpdbpathdirlist
           This option specifies the location of domain CCF file (clean coordinate files) (input). A 'clean
           cordinate file' contains coordinate and other data for a single PDB file or a single domain from SCOP
           or CATH, in CCF format (EMBL-like). The files, generated by using PDBPARSE (pdb files) or DOMAINER
           (domains), contain 'cleaned-up' data that is self-consistent and error-corrected. Records for residue
           solvent accessibility and secondary structure are added to the file by using PDBPLUS. Default value:
           ./

       -dcfinfileinfile
           This option specifies the name of DCF file (domain classification file) (input). A 'domain
           classification file' contains classification and other data for domains from SCOP or CATH, in DCF
           format (EMBL-like). The files are generated by using SCOPPARSE and CATHPARSE. Domain sequence
           information can be added to the file by using DOMAINSEQS.

   Requiredsection-thresholdfloat
           This option specifies the threshold for inclusion (Angstroms). Domains exceeding the threshold for
           inclusion (Angstroms) will not be given in the output file. Default value: 2.8

   Outputsection-dcfoutfileoutfile
           This option specifies the name of DCF file (domain classification file) (output). A 'domain
           classification file' contains classification and other data for domains from SCOP or CATH, in DCF
           format (EMBL-like). The files are generated by using SCOPPARSE and CATHPARSE. Domain sequence
           information can be added to the file by using DOMAINSEQS. Default value: test.scop

       domainreso is fully documented via the tfm(1) system.

domainreso-cpdbpathdirlist-dcfinfileinfile-thresholdfloat-dcfoutfileoutfiledomainreso-help