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edirect - access NCBI Entrez from the command line (DEPRECATED)

Common Options

       Most subcommands accept the following options, in addition to command-specific options.

       -help  Print usage information.

       -emailaddress
              Send  the  given e-mail address to have someone to notify in case a runaway script causes problems
              with an NCBI Entrez server.

       -toolname
              Send the given client name.

       -http[s] get
              Force the use of GET rather than POST HTTPS requests.

       -aliasfilename
              Specify a file of shortcut keywords and query strings or URL sections.

       -silent
              Suppress connection failure retry messages.

       -verbose
              Display the ENTREZ_DIRECT XML field values at each step.

       -debug Print the internal URL query and XML results of each step.

       -baseURL
              Specify a particular server for quality assurance testing.

Description

Note:edirect  might  not  appear in future releases of NCBI Entrez Direct.  However, several individual
       commands (esearch through epost) live on as nquire-based shell scripts.

       edirect (Entrez Direct) is a command-line utility for consulting NCBI's set of  interconnected  databases
       (publication,  sequence, structure, gene, variation, expression, etc.)  in a variety of fashions, most of
       which are documented individually in dedicated man pages.  (The one exception is  edirect-nquir,  which
       roughly corresponds to nquire but is fully independent.)

Environment

EDIRECT_DO_AUTO_ABBREV
              Accept (currently) unambiguous truncated option names, as in -verbo for -verbose.

       NCBI_API_KEY
              NCBI E-Utilities API key, allowing for a higher request rate at the cost of some anonymity.

Name

       edirect - access NCBI Entrez from the command line (DEPRECATED)

See Also

eaddress(1), eblast(1), ecitmatch(1), econtact(1), efetch(1), efilter(1), einfo(1), elink(1), enotify(1),
       entrez-phrase-search(1), epost(1), eproxy(1), esearch(1), espell(1), esummary(1),  ftp-cp(1),  ftp-ls(1),
       nquire(1), transmute(1), xtract(1).

NCBI                                               2021-03-07                                         EDIRECT(1)

Synopsis

edirect-versionesearch (edirect-search) optionselink (edirect-link) optionsefilter (edirect-filter) optionsesummary (edirect-summary) optionsefetch (edirect-fetch) optionseinfo (edirect-info) optionsepost (edirect-post) optionsespell (edirect-spell) optionsecitmatch (edirect-citmatch) optionseproxy (edirect-proxy) optionsecontact (edirect-contact) optionsenotify (edirect-notify) optionseaddress (edirect-address) optionseblast (edirect-blast) optionsftp-ls (edirect-ftpls) optionsftp-cp (edirect-ftpcp) optionstransmute (edirect-tmute) optionsedirect-nquiroptions

See Also